Baseball in the UAAP is an all-male sport. Six teams are participating in the seniors division while there are four teams in the juniors division. Baseball was introduced as a sport in the seniors division in 1938. In the juniors division, Baseball was added as a demonstration sport in Season 74 (2011–12) as there were only three teams participating. In Season 80 (2017–18), it was elevated to a regular sport since the number of participating teams increased to four.

UAAP Season Seniors' division 1 (1938–39)  University of the Philippines Diliman 2 (1939–40)  University of the Philippines Diliman  University of Santo Tomas 3 (1940–41)  University of Santo Tomas 4 (1941–42) Not held during World War II. 5 (1942–43) Not held during World War II. 6 (1943–44) Not held during World War II. 7 (1944–45) Not held during World War II. 8 (1945–46) Not held during World War II. 9 (1946–47)  University of Santo Tomas 10 (1947–48)  Far Eastern University 11 (1948–49)  University of Santo Tomas 12 (1949–50)  University of Santo Tomas 13 (1950–51)  University of Santo Tomas 14 (1951–52)  University of Santo Tomas 15 (1952–53)  Far Eastern University 16 (1953–54)  University of Santo Tomas 17 (1954–55)  Far Eastern University 18 (1955–56)  University of Santo Tomas 19 (1956–57)  Far Eastern University 20 (1957–58)  University of Santo Tomas 21 (1958–59)  University of Santo Tomas 22 (1959–60)  Far Eastern University 23 (1960–61) Manila Central University 24 (1961–62) Not Held 25 (1962–63)  Far Eastern University

UAAP Season Seniors' division 26 (1963–64)  Far Eastern University 27 (1964–65)  University of Santo Tomas 28 (1965–66)  National University 29 (1966–67)  National University 30 (1967–68)  University of the East 31 (1968–69)  University of Santo Tomas 32 (1969–70)  University of the East 33 (1970–71)  Far Eastern University  University of the East 34 (1971–72)  University of the East 35 (1972–73) Not Held 36 (1973–74)  Far Eastern University 37 (1974–75)  Far Eastern University 38 (1975–76)  Far Eastern University 39 (1976–77)  Far Eastern University 40 (1977–78)  Far Eastern University  University of the Philippines Diliman 41 (1978–79)  University of the Philippines Diliman 42 (1979–80)  University of the Philippines Diliman 43 (1980–81)  University of the Philippines Diliman 44 (1981–82)  University of the Philippines Diliman 45 (1982–83)  University of Santo Tomas 46 (1983–84)  University of Santo Tomas 47 (1984–85)  University of Santo Tomas 48 (1985–86)  University of Santo Tomas 49 (1986–87)  Adamson University 50 (1987–88)  Adamson University

UAAP Season Seniors' division 51 (1988–89)  University of Santo Tomas 52 (1989–90)  Adamson University 53 (1990–91)  University of Santo Tomas 54 (1991–92)  Adamson University 55 (1992–93)  Adamson University 56 (1993–94)  Adamson University 57 (1994–95)  University of Santo Tomas 58 (1995–96)  De La Salle University 59 (1996–97)  University of Santo Tomas 60 (1997–98)  Adamson University 61 (1998–99)  Adamson University 62 (1999–00)  De La Salle University 63 (2000–01)  University of the Philippines Diliman 64 (2001–02)  University of the Philippines Diliman 65 (2002–03)  De La Salle University 66 (2003–04)  University of the Philippines Diliman 67 (2004–05)  University of Santo Tomas 68 (2005–06)  University of the Philippines Diliman 69 (2006–07)  University of Santo Tomas 70 (2007–08)  Adamson University 71 (2008–09)  Adamson University 72 (2009–10)  Adamson University 73 (2010–11)  University of Santo Tomas

UAAP Season	Men's division (Seniors' division before UAAP Season 82)	High School division (Juniors' division before UAAP Season 82)
74 (2011–12)	National University	De La Salle Zobel
75 (2012–13)	Ateneo de Manila University	Ateneo de Manila University
76 (2013–14)	Ateneo de Manila University	De La Salle Zobel
77 (2014–15)	Ateneo de Manila University	De La Salle Zobel
78 (2015–16)	De La Salle University	Ateneo de Manila University
79 (2016–17)	Ateneo de Manila University	De La Salle Zobel
80 (2017–18)	Adamson University	University of Santo Tomas
81 (2018–19)	De La Salle University	Ateneo de Manila University
82 (2019–20)	Cancelled due to COVID-19 pandemic	University of Santo Tomas
83 (2020–21)	Cancelled due to COVID-19 pandemic
84 (2021–22)	Not held due to COVID-19 pandemic
85 (2022–23)	De La Salle University	No tournament
86 (2023–24)	National University	No tournament

  demonstration sport

School	Seniors' division	Juniors' division	Total
University of Santo Tomas	24	2	26
Far Eastern University	13	0	13
Adamson University	12	0	12
University of the Philippines Diliman	11	0	11
De La Salle University	6	4	10
Ateneo de Manila University	4	3	7
National University	4	0	4
University of the East	4	0	4
Manila Central University*	1	0	1

*School withdrew from the UAAP in 1962.

• UAAP Championship Scoreboard (List of Champions of all UAAP sports until 1998–99)