The following is a partial list of research institutes in Pakistan.

• Abdus Salam School of Mathematical Sciences, GC University Lahore^[1]
• Azra Naheed Center for Research and Development, Superior University Lahore
• Atta-Ur-Rahman School of Applied Biosciences, National University of Sciences and Technology (Pakistan), Islamabad
• Al-Khawarizmi Institute of Computer Science, UET, Lahore
• Applied Economic Research Center
• Applied Economics Research Centre
• Area Study Center for Europe, University of Karachi
• Baba Fareed Islamic Research Centre (BFIRC), University of Lahore, Pakpattan
• Central Cotton Research Institute, Nawabshah
• Civil Aviation Training Institute
• Centre for Research in Molecular Medicine (CRIMM), University of Lahore
• FAST-NUCES, Islamabad.
• Hydrocarbon Development Institute of Pakistan
• Institute of Policy Studies (IPS)
• Institute of Regional Studies, Islamabad (IRS)
• Institute of Social and Policy Sciences (I-SAPS)
• The Institute of Strategic Studies, Islamabad (ISSI)
• Institute Of Cost And Management Accountants Of Pakistan
• Islamabad Policy Research Institute (IPRI)
• Lahore University of Management Sciences (LUMS)
• Marine Fisheries Department
• National Centre for Physics
• National Fertilizer Development Centre (NFDC)
• National Institute for Biotechnology and Genetic Engineering (NIBGE), Faislabad
• National Institute of Electronics
• National Institute of Oceanography
• Pakistan Administrative Staff College, Lahore
• Pakistan Agricultural Research Council, Islamabad
• Pakistan Bureau of Statistics
• Pakistan Institute of Development Economics (PIDE)
• Pakistan Institute of Engineering and Applied Sciences (PIEAS)
• Pakistan Institute of International Affairs, Karachi
• Pakistan Institute of Labour Education and Research (PILER)
• Pakistan Marine Academy
• Petroleum Institute of Pakistan
• Radiology Research Section (RRS), University of Lahore
• Social Policy and Development Centre (SPDC)
• Station for Ostrich Research and Development [SORD], Department of Poultry Science PMAS Arid Agriculture University, Rawalpindi Pakistan
• University College of Engineering & Technology, The Islamia University of Bahawalpur
• Lahore School of Economics (LSE)
• School of Interdisciplinary Engineering & Sciences, National University of Sciences & Technology