Martina Hingis and Anna Kournikova defeated Larisa Neiland and Arantxa Sánchez Vicario in the final, 6–4, 6–4 to win the doubles tennis title at the 1999 WTA Tour Championships.
Lindsay Davenport and Natasha Zvereva were the reigning champions, but only Davenport qualified this year partnering Corina Morariu. They were defeated in the semifinals by Neiland and Sánchez Vicario.
Seeds
Martina Hingis / 
Anna Kournikova (champions)
Lindsay Davenport / Corina Morariu (semifinals)- Lisa Raymond /
Rennae Stubbs (semifinals) 
Larisa Neiland / 
Arantxa Sánchez Vicario (final)
Draw
Key
- Q = Qualifier
- WC = Wild card
- LL = Lucky loser
- Alt = Alternate
- SE = Special exempt
- PR = Protected ranking
- ITF = ITF entry
- JE = Junior exempt
- w/o = Walkover
- r = Retired
- d = Defaulted
- SR = Special ranking
Finals
| Quarterfinals | Semifinals | Final | ||||||||||||||||||
| 1 | Martina Hingis Anna Kournikova
| 1 | 6 | 7 | ||||||||||||||||
 Alexandra Fusai Nathalie Tauziat
| 6 | 1 | 5 | |||||||||||||||||
| 1 | Martina Hingis Anna Kournikova
| 4 | 77 | 6 | ||||||||||||||||
| 3 | Lisa Raymond Rennae Stubbs
| 6 | 63 | 0 | ||||||||||||||||
| 3 | Lisa Raymond Rennae Stubbs
| 6 | 6 | |||||||||||||||||
Elena Likhovtseva Ai Sugiyama
| 3 | 3 | ||||||||||||||||||
| 1 | Martina Hingis Anna Kournikova
| 6 | 6 | |||||||||||||||||
| 4 | Larisa Neiland Arantxa Sánchez Vicario
| 4 | 4 | |||||||||||||||||
 Irina Spîrlea Caroline Vis
| 3 | 6 | 3 | |||||||||||||||||
| 4 | Larisa Neiland Arantxa Sánchez Vicario
| 6 | 3 | 6 | ||||||||||||||||
| 4 | Larisa Neiland Arantxa Sánchez Vicario
| 77 | 7 | |||||||||||||||||
| 2 | Lindsay Davenport Corina Morariu
| 64 | 5 | |||||||||||||||||
| Alt | Conchita Martínez Patricia Tarabini
| 0 | 5 | |||||||||||||||||
| 2 | Lindsay Davenport Corina Morariu
| 6 | 7 | |||||||||||||||||
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